1 Response_reg#1
3-116 aa · 114 aa · 22.4% of protein
Raw token
Response_reg:3:1.05e-32:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS14225
Response regulator, unclassified
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassRRTypeunclassifiedLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS14225Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 508 aa (37.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
414-455 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:414:0.0000000183:455:42:423 HTH_AraC#3
471-505 aa · 35 aa · 6.9% of protein
Raw token
HTH_AraC:471:0.00000053:505:35:42- Raw architecture: Response_reg:3:1.05e-32:116:114:111#HTH_AraC:414:0.0000000183:455:42:42#HTH_AraC:471:0.00000053:505:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000025.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35424-38656Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000025.1::G00040Context members
ACESTQ_RS14225ACESTQ_RS14230
Partner locus tags
ACESTQ_RS14225ACESTQ_RS14230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882556.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PZ69Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PZ69_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS14225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000025.1Sequence record reported by the local genomic context database.
Genomic interval35 424-36 950 nt1 527 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 424-38 656 ntGCF_964242535::NZ_CAXTAR010000025.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000025.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000025.1All displayed genes belong to this local TCS context.
Neighborhood span35 424-38 656 nt3 233 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 424 nt38 656 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS14225GCF_964242535#ACESTQ_RS14225
RRunclassifiedCurrent focus
35 424-36 950 nt · Reverse (-)
ACESTQ_RS14230GCF_964242535#ACESTQ_RS14230
HKClassic
36 938-38 656 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS09465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0148837
Simplified PFAM architecture for RROC_0148837
PFAM domain coverage: 192 / 508 aa (37.8%)
1 aa508 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[427-505]
- Domain count: 2
- Matched identifier: RROC_0148837
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_18 427-505 ; HTH_18 427-505
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS09465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key