1 Response_reg#1
4-112 aa · 109 aa · 47.8% of protein
Raw token
Response_reg:4:2.76e-31:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS12920
Response regulator OmpR family
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS12920Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:148:2.57e-36:224:77:77- Raw architecture: Response_reg:4:2.76e-31:112:110:111#Trans_reg_C:148:2.57e-36:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000021.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span594-2218Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000021.1::G00036Context members
ACESTQ_RS12920ACESTQ_RS12925
Partner locus tags
ACESTQ_RS12920ACESTQ_RS12925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844849.1Primary protein accession used for annex mappings.
UniProt accessionA7B8K2Primary UniProt accession resolved in the annex database.
UniProt IDA7B8K2_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS12920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000021.1Sequence record reported by the local genomic context database.
Genomic interval594-1 280 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span594-2 218 ntGCF_964242535::NZ_CAXTAR010000021.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000021.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000021.1All displayed genes belong to this local TCS context.
Neighborhood span594-2 218 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
594 nt2 218 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS12920GCF_964242535#ACESTQ_RS12920
RROmpRCurrent focus
594-1 280 nt · Forward (+)
ACESTQ_RS12925GCF_964242535#ACESTQ_RS12925
HKClassic
1 277-2 218 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS17135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302324
Simplified PFAM architecture for RROC_1302324
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1302324
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS17135
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 161 total members. Page 1 / 4.
GCF_000169475#RUMGNA_RS17135 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key