1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:1.38e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS10050
Response regulator OmpR family
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS10050Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.17e-28:229:78:77- Raw architecture: Response_reg:6:1.38e-35:115:111:111#Trans_reg_C:153:1.17e-28:229:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000012.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8325-11181Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000012.1::G00029Context members
ACESTQ_RS10050ACESTQ_RS10055
Partner locus tags
ACESTQ_RS10050ACESTQ_RS10055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373221506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS10050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000012.1Sequence record reported by the local genomic context database.
Genomic interval8 325-9 026 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 325-11 181 ntGCF_964242535::NZ_CAXTAR010000012.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000012.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000012.1All displayed genes belong to this local TCS context.
Neighborhood span8 325-11 181 nt2 857 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 325 nt11 181 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS10050GCF_964242535#ACESTQ_RS10050
RROmpRCurrent focus
8 325-9 026 nt · Forward (+)
ACESTQ_RS10055GCF_964242535#ACESTQ_RS10055
HKClassic
8 998-11 181 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964242535#ACESTQ_RS10050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119261
Simplified PFAM architecture for RROC_1119261
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1119261
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_964242535#ACESTQ_RS10050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key