1 dCache_1#1
173-267 aa · 95 aa · 16.4% of protein
Raw token
dCache_1:173:0.0000362:267:114:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS09455
Histidine kinase, Classic
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS09455Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage359 / 581 aa (61.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation4 items
2 HAMP#2
286-355 aa · 70 aa · 12.0% of protein
Raw token
HAMP:286:0.000000111:355:70:693 His_kinase#3
371-450 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:371:2.42e-26:450:80:804 HATPase_c#4
466-579 aa · 114 aa · 19.6% of protein
Raw token
HATPase_c:466:0.000000000171:579:116:109- Raw architecture: dCache_1:173:0.0000362:267:114:195#HAMP:286:0.000000111:355:70:69#His_kinase:371:2.42e-26:450:80:80#HATPase_c:466:0.000000000171:579:116:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000010.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51695-55044Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000010.1::G00027Context members
ACESTQ_RS09450ACESTQ_RS09455
Partner locus tags
ACESTQ_RS09450ACESTQ_RS09455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373221443.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS09455Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000010.1Sequence record reported by the local genomic context database.
Genomic interval53 299-55 044 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 695-55 044 ntGCF_964242535::NZ_CAXTAR010000010.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000010.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000010.1All displayed genes belong to this local TCS context.
Neighborhood span51 695-55 044 nt3 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 695 nt55 044 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS09450GCF_964242535#ACESTQ_RS09450
RRunclassified
51 695-53 272 nt · Reverse (-)
ACESTQ_RS09455GCF_964242535#ACESTQ_RS09455
HKClassicCurrent focus
53 299-55 044 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964242535#ACESTQ_RS09455The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1161689
Simplified PFAM architecture for HKOC_1161689
PFAM domain coverage: 192 / 581 aa (33.0%)
1 aa581 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-449] | HATPase_c[466-579]
- Domain count: 2
- Matched identifier: HKOC_1161689
- Positioned domains: His_kinase 372-449 ; HATPase_c 466-579
Cluster members and taxonomy
Representative gene: GCF_964242535#ACESTQ_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key