1 HAMP#1
154-227 aa · 74 aa · 16.3% of protein
Raw token
HAMP:154:0.00000000000000209:227:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS09415
Histidine kinase, Classic
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS09415Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 454 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-297 aa · 65 aa · 14.3% of protein
Raw token
HisKA:233:0.0000000000000194:297:65:643 HATPase_c#3
343-454 aa · 112 aa · 24.7% of protein
Raw token
HATPase_c:343:2.3e-28:454:112:109- Raw architecture: HAMP:154:0.00000000000000209:227:74:69#HisKA:233:0.0000000000000194:297:65:64#HATPase_c:343:2.3e-28:454:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000010.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41779-43814Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000010.1::G00026Context members
ACESTQ_RS09415ACESTQ_RS09420
Partner locus tags
ACESTQ_RS09415ACESTQ_RS09420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373221437.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS09415Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000010.1Sequence record reported by the local genomic context database.
Genomic interval41 779-43 143 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 779-43 814 ntGCF_964242535::NZ_CAXTAR010000010.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000010.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000010.1All displayed genes belong to this local TCS context.
Neighborhood span41 779-43 814 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 779 nt43 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS09415GCF_964242535#ACESTQ_RS09415
HKClassicCurrent focus
41 779-43 143 nt · Reverse (-)
ACESTQ_RS09420GCF_964242535#ACESTQ_RS09420
RROmpR
43 140-43 814 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964242535#ACESTQ_RS09415The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1924987
Simplified PFAM architecture for HKOC_1924987
PFAM domain coverage: 234 / 454 aa (51.5%)
1 aa454 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-227] | HisKA[232-297] | HATPase_c[343-453]
- Domain count: 3
- Matched identifier: HKOC_1924987
- Positioned domains: HAMP 171-227 ; HisKA 232-297 ; HATPase_c 343-453
Cluster members and taxonomy
Representative gene: GCF_964242535#ACESTQ_RS09415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key