1 HisKA#1
199-263 aa · 65 aa · 15.3% of protein
Raw token
HisKA:199:0.0000000000000116:263:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS05785
Histidine kinase, Classic
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassHKTypeClassicLength424 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964242535#ACESTQ_RS05785Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length424 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 424 aa (37.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa424 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
310-403 aa · 94 aa · 22.2% of protein
Raw token
HATPase_c:310:0.000000000000013:403:95:109- Raw architecture: HisKA:199:0.0000000000000116:263:65:64#HATPase_c:310:0.000000000000013:403:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964242535::NZ_CAXTAR010000004.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span118056-120009Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000004.1::G00015Context members
ACESTQ_RS05785ACESTQ_RS05790
Partner locus tags
ACESTQ_RS05785ACESTQ_RS05790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_268804287.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3HIT4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3HIT4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS05785Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000004.1Sequence record reported by the local genomic context database.
Genomic interval118 056-119 330 nt1 275 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span118 056-120 009 ntGCF_964242535::NZ_CAXTAR010000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000004.1All displayed genes belong to this local TCS context.
Neighborhood span118 056-120 009 nt1 954 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 056 nt120 009 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESTQ_RS05785GCF_964242535#ACESTQ_RS05785
HKClassicCurrent focus
118 056-119 330 nt · Reverse (-)
ACESTQ_RS05790GCF_964242535#ACESTQ_RS05790
RROmpR
119 302-120 009 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026804885#OZZ18_RS09210Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2229888
Simplified PFAM architecture for HKOC_2229888
PFAM domain coverage: 156 / 424 aa (36.8%)
1 aa424 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[200-263] | HATPase_c[312-403]
- Domain count: 2
- Matched identifier: HKOC_2229888
- Positioned domains: HisKA 200-263 ; HATPase_c 312-403
Cluster members and taxonomy
Representative gene: GCF_026804885#OZZ18_RS09210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key