1 Response_reg#1
4-108 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:4:2.77e-17:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESTQ_RS00235
Response regulator LytTR family
Mediterraneibacter gnavus CC55_001C · GCF_964242535
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964242535#ACESTQ_RS00235Stable P2CS identifier used across views.
GenomeGCF_964242535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 238 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:1.27e-21:229:97:98- Raw architecture: Response_reg:4:2.77e-17:108:108:111#LytTR:138:1.27e-21:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964242535::NZ_CAXTAR010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span48078-48794Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964242535::NZ_CAXTAR010000001.1::G00001Context members
ACESTQ_RS00235
Partner locus tags
ACESTQ_RS00235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_256306592.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESTQ_RS00235Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXTAR010000001.1Sequence record reported by the local genomic context database.
Genomic interval48 078-48 794 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 078-48 794 ntGCF_964242535::NZ_CAXTAR010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964242535::NZ_CAXTAR010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXTAR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span48 078-48 794 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 078 nt48 794 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACESTQ_RS00235GCF_964242535#ACESTQ_RS00235
RRLytTRCurrent focus
48 078-48 794 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024459975#NE704_RS03410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0949542
Simplified PFAM architecture for RROC_0949542
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0949542
- Positioned domains: Response_reg 4-108 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_024459975#NE704_RS03410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_964242535
AssemblyCC00972 · Scaffoldhaploid
Genome composition3 545 778 bp · 42,5% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 82 · HK 40 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key