1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:1.76e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESW3_RS07420
Histidine kinase, Classic
Bifidobacterium longum subsp. longum JCM 1217 · GCF_964237955
ClassHKTypeClassicLength869 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964237955#ACESW3_RS07420Stable P2CS identifier used across views.
GenomeGCF_964237955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length869 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 869 aa (17.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000104:439:104:109- Raw architecture: HisKA_3:242:1.76e-18:304:63:68#HATPase_c:353:0.000000000000104:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964237955::NZ_CAXSKB010000006.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44457-47889Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964237955::NZ_CAXSKB010000006.1::G00009Context members
ACESW3_RS07415ACESW3_RS07420
Partner locus tags
ACESW3_RS07415ACESW3_RS07420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373177552.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESW3_RS07420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXSKB010000006.1Sequence record reported by the local genomic context database.
Genomic interval45 280-47 889 nt2 610 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 457-47 889 ntGCF_964237955::NZ_CAXSKB010000006.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964237955::NZ_CAXSKB010000006.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXSKB010000006.1All displayed genes belong to this local TCS context.
Neighborhood span44 457-47 889 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 457 nt47 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESW3_RS07415GCF_964237955#ACESW3_RS07415
RRNarL
44 457-45 203 nt · Reverse (-)
ACESW3_RS07420GCF_964237955#ACESW3_RS07420
HKClassicCurrent focus
45 280-47 889 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964237955#ACESW3_RS07420The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0461009
Simplified PFAM architecture for HKOC_0461009
PFAM domain coverage: 422 / 869 aa (48.6%)
1 aa869 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-686]
- Domain count: 4
- Matched identifier: HKOC_0461009
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-686
Cluster members and taxonomy
Representative gene: GCF_964237955#ACESW3_RS07420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 042 · GCF_964237955
AssemblyCC00220 · Scaffoldhaploid
Genome composition2 275 512 bp · 60,0% GCBifidobacterium longum subsp. longum JCM 1217
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key