1 Response_reg#1
8-108 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:8:2.86e-20:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q5H31_RS04050
Response regulator LytTR family
uncultured Bifidobacterium sp. · GCF_959020155
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_959020155#Q5H31_RS04050Stable P2CS identifier used across views.
GenomeGCF_959020155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 238 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:1.73e-20:230:97:98- Raw architecture: Response_reg:8:2.86e-20:108:106:111#LytTR:139:1.73e-20:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_959020155::NZ_CAUERC010000009.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span37642-38358Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_959020155::NZ_CAUERC010000009.1::G00008Context members
Q5H31_RS04050
Partner locus tags
Q5H31_RS04050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236836844.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ5H31_RS04050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAUERC010000009.1Sequence record reported by the local genomic context database.
Genomic interval37 642-38 358 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 642-38 358 ntGCF_959020155::NZ_CAUERC010000009.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_959020155::NZ_CAUERC010000009.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAUERC010000009.1All displayed genes belong to this local TCS context.
Neighborhood span37 642-38 358 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 642 nt38 358 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q5H31_RS04050GCF_959020155#Q5H31_RS04050
RRLytTRCurrent focus
37 642-38 358 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406735#ARA23_RS08470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936245
Simplified PFAM architecture for RROC_0936245
PFAM domain coverage: 192 / 238 aa (80.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-109] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0936245
- Positioned domains: Response_reg 7-109 ; Response_reg 7-109 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_001406735#ARA23_RS08470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 165 187 · GCF_959020155
AssemblyERR10149223_bin.28_MetaWRAP_v1.3_MAG · Contighaploid
Genome composition1 950 483 bp · 60,5% GCuncultured Bifidobacterium sp.
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key