1 Response_reg#1
39-149 aa · 111 aa · 43.7% of protein
Raw token
Response_reg:39:1.5e-30:149:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q5H33_RS03265
Response regulator, AmiR_NasR family
uncultured Bifidobacterium sp. · GCF_959020145
ClassRRTypeAmiR_NasRLength254 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_959020145#Q5H33_RS03265Stable P2CS identifier used across views.
GenomeGCF_959020145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 254 aa (62.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation2 items
2 ANTAR#2
193-240 aa · 48 aa · 18.9% of protein
Raw token
ANTAR:193:6.46e-16:240:48:49- Raw architecture: Response_reg:39:1.5e-30:149:112:111#ANTAR:193:6.46e-16:240:48:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_959020145::NZ_CAUEQY010000006.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span49-813Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_959020145::NZ_CAUEQY010000006.1::G00004Context members
Q5H33_RS03265
Partner locus tags
Q5H33_RS03265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_221651633.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ5H33_RS03265Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAUEQY010000006.1Sequence record reported by the local genomic context database.
Genomic interval49-813 nt765 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49-813 ntGCF_959020145::NZ_CAUEQY010000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_959020145::NZ_CAUEQY010000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAUEQY010000006.1All displayed genes belong to this local TCS context.
Neighborhood span49-813 nt765 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 nt813 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q5H33_RS03265GCF_959020145#Q5H33_RS03265
RRAmiR_NasRCurrent focus
49-813 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019734235#HCG62_RS04075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0691415
Simplified PFAM architecture for RROC_0691415
PFAM domain coverage: 163 / 254 aa (64.2%)
1 aa254 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[39-148] | ANTAR[188-240]
- Domain count: 2
- Matched identifier: RROC_0691415
- Positioned domains: Response_reg 39-148 ; ANTAR 188-240
Cluster members and taxonomy
Representative gene: GCF_019734235#HCG62_RS04075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 165 187 · GCF_959020145
AssemblyERR10149223_bin.5_MetaWRAP_v1.3_MAG · Contighaploid
Genome composition1 969 741 bp · 58,5% GCuncultured Bifidobacterium sp.
Signal transduction countsGenes 20 · HK 8 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key