1 HisKA_3#1
136-200 aa · 65 aa · 18.5% of protein
Raw token
HisKA_3:136:0.00000000000000603:200:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q5H33_RS02160
Histidine kinase, Classic
uncultured Bifidobacterium sp. · GCF_959020145
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_959020145#Q5H33_RS02160Stable P2CS identifier used across views.
GenomeGCF_959020145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 352 aa (45.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
245-338 aa · 94 aa · 26.7% of protein
Raw token
HATPase_c:245:0.000000207:338:100:109- Raw architecture: HisKA_3:136:0.00000000000000603:200:65:68#HATPase_c:245:0.000000207:338:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_959020145::NZ_CAUEQY010000003.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101654-103416Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_959020145::NZ_CAUEQY010000003.1::G00002Context members
Q5H33_RS02155Q5H33_RS02160
Partner locus tags
Q5H33_RS02155Q5H33_RS02160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302422756.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ5H33_RS02160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAUEQY010000003.1Sequence record reported by the local genomic context database.
Genomic interval102 358-103 416 nt1 059 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 654-103 416 ntGCF_959020145::NZ_CAUEQY010000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_959020145::NZ_CAUEQY010000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAUEQY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span101 654-103 416 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 654 nt103 416 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q5H33_RS02155GCF_959020145#Q5H33_RS02155
RRNarL
101 654-102 358 nt · Reverse (-)
Q5H33_RS02160GCF_959020145#Q5H33_RS02160
HKClassicCurrent focus
102 358-103 416 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465205#DWW22_RS05010Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2408381
Simplified PFAM architecture for HKOC_2408381
PFAM domain coverage: 66 / 404 aa (16.3%)
1 aa404 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[188-253]
- Domain count: 1
- Matched identifier: HKOC_2408381
- Positioned domains: HisKA_3 188-253
Cluster members and taxonomy
Representative gene: GCF_003465205#DWW22_RS05010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 165 187 · GCF_959020145
AssemblyERR10149223_bin.5_MetaWRAP_v1.3_MAG · Contighaploid
Genome composition1 969 741 bp · 58,5% GCuncultured Bifidobacterium sp.
Signal transduction countsGenes 20 · HK 8 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key