1 Response_reg#1
17-131 aa · 115 aa · 52.3% of protein
Raw token
Response_reg:17:0.000000000000359:131:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q4V24_RS04740
Response regulator NarL family
uncultured Bifidobacterium sp. · GCF_958437865
ClassRRTypeNarLLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_958437865#Q4V24_RS04740Stable P2CS identifier used across views.
GenomeGCF_958437865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 220 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-215 aa · 57 aa · 25.9% of protein
Raw token
HTH_LUXR:159:0.0000000000000232:215:57:58- Raw architecture: Response_reg:17:0.000000000000359:131:120:111#HTH_LUXR:159:0.0000000000000232:215:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_958437865::NZ_CAUBPO010000010.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26338-27000Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_958437865::NZ_CAUBPO010000010.1::G00005Context members
Q4V24_RS04740
Partner locus tags
Q4V24_RS04740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302165466.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ4V24_RS04740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAUBPO010000010.1Sequence record reported by the local genomic context database.
Genomic interval26 338-27 000 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 338-27 000 ntGCF_958437865::NZ_CAUBPO010000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_958437865::NZ_CAUBPO010000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAUBPO010000010.1All displayed genes belong to this local TCS context.
Neighborhood span26 338-27 000 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 338 nt27 000 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q4V24_RS04740GCF_958437865#Q4V24_RS04740
RRNarLCurrent focus
26 338-27 000 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_958437865#Q4V24_RS04740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1766783
Simplified PFAM architecture for RROC_1766783
PFAM domain coverage: 168 / 220 aa (76.4%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-130] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1766783
- Positioned domains: Response_reg 17-130 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_958437865#Q4V24_RS04740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 165 187 · GCF_958437865
AssemblyERR10960878_bin.19_MetaWRAP_v1.3_MAG · Contighaploid
Genome composition2 263 597 bp · 56,5% GCuncultured Bifidobacterium sp.
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key