1 Response_reg#1
7-110 aa · 104 aa · 47.7% of protein
Raw token
Response_reg:7:0.00000000774:110:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QT401_RS06165
Response regulator, unclassified
Bifidobacterium ruminantium · GCF_949292605
ClassRRTypeunclassifiedLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_949292605#QT401_RS06165Stable P2CS identifier used across views.
GenomeGCF_949292605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 218 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 GerE#2
156-211 aa · 56 aa · 25.7% of protein
Raw token
GerE:156:0.0000000000000108:211:56:57- Raw architecture: Response_reg:7:0.00000000774:110:104:111#GerE:156:0.0000000000000108:211:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_949292605::NZ_CASFAE010000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span64838-66720Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_949292605::NZ_CASFAE010000005.1::G00013Context members
QT401_RS06160QT401_RS06165
Partner locus tags
QT401_RS06160QT401_RS06165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217063504.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQT401_RS06165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CASFAE010000005.1Sequence record reported by the local genomic context database.
Genomic interval66 064-66 720 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 838-66 720 ntGCF_949292605::NZ_CASFAE010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_949292605::NZ_CASFAE010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CASFAE010000005.1All displayed genes belong to this local TCS context.
Neighborhood span64 838-66 720 nt1 883 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 838 nt66 720 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QT401_RS06160GCF_949292605#QT401_RS06160
HKClassic
64 838-65 845 nt · Reverse (-)
QT401_RS06165GCF_949292605#QT401_RS06165
RRunclassifiedCurrent focus
66 064-66 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019042115#KTJ39_RS06605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1827717
Simplified PFAM architecture for RROC_1827717
PFAM domain coverage: 160 / 218 aa (73.4%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-111] | GerE[157-211]
- Domain count: 2
- Matched identifier: RROC_1827717
- Positioned domains: Response_reg 7-111 ; GerE 157-211
Cluster members and taxonomy
Representative gene: GCF_019042115#KTJ39_RS06605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 78 346 · GCF_949292605
AssemblyA58_L2_H540_idba_bin.8 · Contighaploid
Genome composition1 918 289 bp · 60,0% GCBifidobacterium ruminantium
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key