1 HisKA_3#1
96-163 aa · 68 aa · 20.3% of protein
Raw token
HisKA_3:96:0.0000608:163:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QT401_RS06160
Histidine kinase, Classic
Bifidobacterium ruminantium · GCF_949292605
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_949292605#QT401_RS06160Stable P2CS identifier used across views.
GenomeGCF_949292605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 335 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
212-308 aa · 97 aa · 29.0% of protein
Raw token
HATPase_c:212:0.0000578:308:107:109- Raw architecture: HisKA_3:96:0.0000608:163:68:68#HATPase_c:212:0.0000578:308:107:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_949292605::NZ_CASFAE010000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span64838-66720Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_949292605::NZ_CASFAE010000005.1::G00013Context members
QT401_RS06160QT401_RS06165
Partner locus tags
QT401_RS06160QT401_RS06165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286027817.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQT401_RS06160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CASFAE010000005.1Sequence record reported by the local genomic context database.
Genomic interval64 838-65 845 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 838-66 720 ntGCF_949292605::NZ_CASFAE010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_949292605::NZ_CASFAE010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CASFAE010000005.1All displayed genes belong to this local TCS context.
Neighborhood span64 838-66 720 nt1 883 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 838 nt66 720 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QT401_RS06160GCF_949292605#QT401_RS06160
HKClassicCurrent focus
64 838-65 845 nt · Reverse (-)
QT401_RS06165GCF_949292605#QT401_RS06165
RRunclassified
66 064-66 720 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_949292605#QT401_RS06160The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849711
Simplified PFAM architecture for HKOC_2849711
PFAM domain coverage: 69 / 335 aa (20.6%)
1 aa335 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[94-162]
- Domain count: 1
- Matched identifier: HKOC_2849711
- Positioned domains: HisKA_3 94-162
Cluster members and taxonomy
Representative gene: GCF_949292605#QT401_RS06160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 78 346 · GCF_949292605
AssemblyA58_L2_H540_idba_bin.8 · Contighaploid
Genome composition1 918 289 bp · 60,0% GCBifidobacterium ruminantium
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key