1 HAMP#1
228-297 aa · 70 aa · 11.4% of protein
Raw token
HAMP:228:0.00000000000000701:297:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QT401_RS02030
Histidine kinase, Classic
Bifidobacterium ruminantium · GCF_949292605
ClassHKTypeClassicLength613 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_949292605#QT401_RS02030Stable P2CS identifier used across views.
GenomeGCF_949292605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length613 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 613 aa (47.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa613 aa
Domain-by-domain annotation3 items
2 HisKA#2
308-377 aa · 70 aa · 11.4% of protein
Raw token
HisKA:308:4.65e-16:377:70:643 HATPase_c#3
441-588 aa · 148 aa · 24.1% of protein
Raw token
HATPase_c:441:2.04e-20:588:148:109- Raw architecture: HAMP:228:0.00000000000000701:297:70:69#HisKA:308:4.65e-16:377:70:64#HATPase_c:441:2.04e-20:588:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_949292605::NZ_CASFAE010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span457707-460295Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_949292605::NZ_CASFAE010000001.1::G00005Context members
QT401_RS02030QT401_RS02035
Partner locus tags
QT401_RS02030QT401_RS02035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_374042502.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQT401_RS02030Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CASFAE010000001.1Sequence record reported by the local genomic context database.
Genomic interval457 707-459 554 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span457 707-460 295 ntGCF_949292605::NZ_CASFAE010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_949292605::NZ_CASFAE010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CASFAE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span457 707-460 295 nt2 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
457 707 nt460 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QT401_RS02030GCF_949292605#QT401_RS02030
HKClassicCurrent focus
457 707-459 554 nt · Reverse (-)
QT401_RS02035GCF_949292605#QT401_RS02035
RROmpR
459 564-460 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902485995#RDL75_RS03100Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0990998
Simplified PFAM architecture for HKOC_0990998
PFAM domain coverage: 266 / 615 aa (43.3%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[250-299] | HisKA[311-379] | HATPase_c[443-589]
- Domain count: 3
- Matched identifier: HKOC_0990998
- Positioned domains: HAMP 250-299 ; HisKA 311-379 ; HATPase_c 443-589
Cluster members and taxonomy
Representative gene: GCF_902485995#RDL75_RS03100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 78 346 · GCF_949292605
AssemblyA58_L2_H540_idba_bin.8 · Contighaploid
Genome composition1 918 289 bp · 60,0% GCBifidobacterium ruminantium
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key