1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:1.91e-35:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NNK44_RS18315
Response regulator OmpR family
Clostridioides difficile · GCF_944989955
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_944989955#NNK44_RS18315Stable P2CS identifier used across views.
GenomeGCF_944989955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:148:5.32e-25:224:77:77- Raw architecture: Response_reg:6:1.91e-35:116:112:111#Trans_reg_C:148:5.32e-25:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_944989955::NZ_CALYLV010000001.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3915854-3917916Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_944989955::NZ_CALYLV010000001.1::G00052Context members
NNK44_RS18310NNK44_RS18315
Partner locus tags
NNK44_RS18310NNK44_RS18315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005927600.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QPF7Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QPF7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNNK44_RS18315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALYLV010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 917 221-3 917 916 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 915 854-3 917 916 ntGCF_944989955::NZ_CALYLV010000001.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_944989955::NZ_CALYLV010000001.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALYLV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 915 854-3 917 916 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 915 854 nt3 917 916 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NNK44_RS18310GCF_944989955#NNK44_RS18310
HKClassic
3 915 854-3 917 224 nt · Reverse (-)
NNK44_RS18315GCF_944989955#NNK44_RS18315
RROmpRCurrent focus
3 917 221-3 917 916 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS13605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158100
Simplified PFAM architecture for RROC_1158100
PFAM domain coverage: 187 / 231 aa (81.0%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1158100
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS13605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_944989955
AssemblyJMR5_assembly · Contighaploid
Genome composition4 356 649 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key