1 GGDEF#1
136-276 aa · 141 aa · 21.4% of protein
Raw token
GGDEF:136:7.37e-39:276:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QV722_RS08150
Response regulator, RpfG family
uncultured Blautia sp. · GCF_943912995
ClassRRTypeRpfGLength658 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_943912995#QV722_RS08150Stable P2CS identifier used across views.
GenomeGCF_943912995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length658 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 658 aa (53.8%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa658 aa
Domain-by-domain annotation3 items
2 Response_reg#2
304-415 aa · 112 aa · 17.0% of protein
Raw token
Response_reg:304:1.36e-30:415:113:1113 HD#3
496-596 aa · 101 aa · 15.3% of protein
Raw token
HD:496:0.00000000000519:596:101:110- Raw architecture: GGDEF:136:7.37e-39:276:153:160#Response_reg:304:1.36e-30:415:113:111#HD:496:0.00000000000519:596:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_943912995::NZ_CALTWP010000052.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2362-4338Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_943912995::NZ_CALTWP010000052.1::G00030Context members
QV722_RS08150
Partner locus tags
QV722_RS08150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118633306.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQV722_RS08150Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALTWP010000052.1Sequence record reported by the local genomic context database.
Genomic interval2 362-4 338 nt1 977 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 362-4 338 ntGCF_943912995::NZ_CALTWP010000052.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_943912995::NZ_CALTWP010000052.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALTWP010000052.1All displayed genes belong to this local TCS context.
Neighborhood span2 362-4 338 nt1 977 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 362 nt4 338 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QV722_RS08150GCF_943912995#QV722_RS08150
RRRpfGCurrent focus
2 362-4 338 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020687085#LKD69_RS03460Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0035172
Simplified PFAM architecture for RROC_0035172
PFAM domain coverage: 388 / 658 aa (59.0%)
1 aa658 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-278] | Response_reg[304-415] | HD_5[483-615]
- Domain count: 3
- Matched identifier: RROC_0035172
- Positioned domains: GGDEF 136-278 ; Response_reg 304-415 ; HD_5 483-615
Cluster members and taxonomy
Representative gene: GCF_020687085#LKD69_RS03460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_943912995
AssemblyAUYp17LyRY_bin.21.MAG · Contighaploid
Genome composition3 936 508 bp · 41,5% GCuncultured Blautia sp.
Signal transduction countsGenes 103 · HK 53 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key