1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:4.74e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBW52_RS00870
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_939149175
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_939149175#NBW52_RS00870Stable P2CS identifier used across views.
GenomeGCF_939149175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:2.56e-30:235:77:77- Raw architecture: Response_reg:15:4.74e-36:122:109:111#Trans_reg_C:164:2.56e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_939149175::NZ_CALNDN010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span192242-194037Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_939149175::NZ_CALNDN010000001.1::G00005Context members
NBW52_RS00870NBW52_RS00875
Partner locus tags
NBW52_RS00870NBW52_RS00875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250230429.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBW52_RS00870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALNDN010000001.1Sequence record reported by the local genomic context database.
Genomic interval192 242-192 964 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span192 242-194 037 ntGCF_939149175::NZ_CALNDN010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_939149175::NZ_CALNDN010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALNDN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span192 242-194 037 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
192 242 nt194 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBW52_RS00870GCF_939149175#NBW52_RS00870
RROmpRCurrent focus
192 242-192 964 nt · Forward (+)
NBW52_RS00875GCF_939149175#NBW52_RS00875
HKClassic
192 964-194 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS00765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0898417
Simplified PFAM architecture for RROC_0898417
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0898417
- Positioned domains: Response_reg 15-122 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS00765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_939149175
Assemblyhadza_2614_Bf33 · Contighaploid
Genome composition2 598 212 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key