1 HisKA_3#1
219-283 aa · 65 aa · 14.7% of protein
Raw token
HisKA_3:219:0.0000000000625:283:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBW40_RS08150
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_939149025
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_939149025#NBW40_RS08150Stable P2CS identifier used across views.
GenomeGCF_939149025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 441 aa (32.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
349-427 aa · 79 aa · 17.9% of protein
Raw token
HATPase_c:349:0.0000763:427:85:109- Raw architecture: HisKA_3:219:0.0000000000625:283:65:68#HATPase_c:349:0.0000763:427:85:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_939149025::NZ_CALNDO010000010.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22451-24500Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_939149025::NZ_CALNDO010000010.1::G00018Context members
NBW40_RS08150NBW40_RS08155
Partner locus tags
NBW40_RS08150NBW40_RS08155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250231594.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBW40_RS08150Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALNDO010000010.1Sequence record reported by the local genomic context database.
Genomic interval22 451-23 776 nt1 326 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 451-24 500 ntGCF_939149025::NZ_CALNDO010000010.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_939149025::NZ_CALNDO010000010.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALNDO010000010.1All displayed genes belong to this local TCS context.
Neighborhood span22 451-24 500 nt2 050 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 451 nt24 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBW40_RS08150GCF_939149025#NBW40_RS08150
HKClassicCurrent focus
22 451-23 776 nt · Forward (+)
NBW40_RS08155GCF_939149025#NBW40_RS08155
RRNarL
23 793-24 500 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS08665Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2067687
Simplified PFAM architecture for HKOC_2067687
PFAM domain coverage: 68 / 441 aa (15.4%)
1 aa441 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[219-286]
- Domain count: 1
- Matched identifier: HKOC_2067687
- Positioned domains: HisKA_3 219-286
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS08665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_939149025
Assemblyhadza_2614_Bf34 · Contighaploid
Genome composition2 598 296 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key