1 Response_reg#1
4-111 aa · 108 aa · 48.9% of protein
Raw token
Response_reg:4:1.8e-30:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBW38_RS03880
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_939130405
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_939130405#NBW38_RS03880Stable P2CS identifier used across views.
GenomeGCF_939130405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 33.0% of protein
Raw token
Trans_reg_C:146:1.04e-22:218:75:77- Raw architecture: Response_reg:4:1.8e-30:111:111:111#Trans_reg_C:146:1.04e-22:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_939130405::NZ_CALNDI010000004.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10183-12197Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_939130405::NZ_CALNDI010000004.1::G00011Context members
NBW38_RS03880NBW38_RS03885
Partner locus tags
NBW38_RS03880NBW38_RS03885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250230753.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBW38_RS03880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALNDI010000004.1Sequence record reported by the local genomic context database.
Genomic interval10 183-10 848 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 183-12 197 ntGCF_939130405::NZ_CALNDI010000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_939130405::NZ_CALNDI010000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALNDI010000004.1All displayed genes belong to this local TCS context.
Neighborhood span10 183-12 197 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 183 nt12 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBW38_RS03880GCF_939130405#NBW38_RS03880
RROmpRCurrent focus
10 183-10 848 nt · Forward (+)
NBW38_RS03885GCF_939130405#NBW38_RS03885
HKClassic
10 908-12 197 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS04355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0898418
Simplified PFAM architecture for RROC_0898418
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-130] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0898418
- Positioned domains: Response_reg 23-130 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS04355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_939130405
Assemblyhadza_2614_Bf31 · Contighaploid
Genome composition2 597 299 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key