1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.000000000000021:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBW61_RS00555
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_939128435
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_939128435#NBW61_RS00555Stable P2CS identifier used across views.
GenomeGCF_939128435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000566:443:120:109- Raw architecture: HisKA_3:215:0.000000000000021:278:64:68#HATPase_c:325:0.0000000566:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_939128435::NZ_CALNDH010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124426-126431Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_939128435::NZ_CALNDH010000001.1::G00004Context members
NBW61_RS00550NBW61_RS00555
Partner locus tags
NBW61_RS00550NBW61_RS00555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250235193.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBW61_RS00555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALNDH010000001.1Sequence record reported by the local genomic context database.
Genomic interval125 079-126 431 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span124 426-126 431 ntGCF_939128435::NZ_CALNDH010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_939128435::NZ_CALNDH010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALNDH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span124 426-126 431 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 426 nt126 431 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBW61_RS00550GCF_939128435#NBW61_RS00550
RRNarL
124 426-125 079 nt · Reverse (-)
NBW61_RS00555GCF_939128435#NBW61_RS00555
HKClassicCurrent focus
125 079-126 431 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033658025#RS922_RS00555Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1969546
Simplified PFAM architecture for HKOC_1969546
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1969546
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_033658025#RS922_RS00555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_939128435
Assemblyhadza_2261_Bf19 · Contighaploid
Genome composition2 684 425 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 42 · HK 14 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key