1 Response_reg#1
4-117 aa · 114 aa · 23.6% of protein
Raw token
Response_reg:4:1.66e-34:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMD54_RS09365
Response regulator, unclassified
Neglectibacter timonensis · GCF_937966475
ClassRRTypeunclassifiedLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937966475#QMD54_RS09365Stable P2CS identifier used across views.
GenomeGCF_937966475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 483 aa (32.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
421-461 aa · 41 aa · 8.5% of protein
Raw token
HTH_AraC:421:0.0000000129:461:41:42- Raw architecture: Response_reg:4:1.66e-34:117:114:111#HTH_AraC:421:0.0000000129:461:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937966475::NZ_CALCKC010000265.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3230Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937966475::NZ_CALCKC010000265.1::G00028Context members
QMD54_RS09365QMD54_RS09370
Partner locus tags
QMD54_RS09365QMD54_RS09370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_281691454.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMD54_RS09365Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALCKC010000265.1Sequence record reported by the local genomic context database.
Genomic interval1-1 450 nt1 450 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 230 ntGCF_937966475::NZ_CALCKC010000265.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937966475::NZ_CALCKC010000265.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALCKC010000265.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 230 nt3 230 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 230 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMD54_RS09365GCF_937966475#QMD54_RS09365
RRunclassifiedCurrent focus
1-1 450 nt · Reverse (-)
QMD54_RS09370GCF_937966475#QMD54_RS09370
HKClassic
1 452-3 230 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS00990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0126675
Simplified PFAM architecture for RROC_0126675
PFAM domain coverage: 194 / 520 aa (37.3%)
1 aa520 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[433-512]
- Domain count: 2
- Matched identifier: RROC_0126675
- Positioned domains: Response_reg 4-117 ; HTH_18 433-512
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS00990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_937966475
AssemblyERR1600698_bin.17_CONCOCT_v1.1_MAG · Contighaploid
Genome composition3 314 458 bp · 53,5% GCNeglectibacter timonensis
Signal transduction countsGenes 86 · HK 43 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key