1 Response_reg#1
4-112 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:4:3.95e-37:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMD54_RS05070
Response regulator OmpR family
Neglectibacter timonensis · GCF_937966475
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937966475#QMD54_RS05070Stable P2CS identifier used across views.
GenomeGCF_937966475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 224 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 32.6% of protein
Raw token
Trans_reg_C:143:3e-22:215:77:77- Raw architecture: Response_reg:4:3.95e-37:112:111:111#Trans_reg_C:143:3e-22:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937966475::NZ_CALCKC010000142.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29726-31857Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937966475::NZ_CALCKC010000142.1::G00015Context members
QMD54_RS05070QMD54_RS05075
Partner locus tags
QMD54_RS05070QMD54_RS05075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066861896.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RW01Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RW01_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMD54_RS05070Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALCKC010000142.1Sequence record reported by the local genomic context database.
Genomic interval29 726-30 400 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 726-31 857 ntGCF_937966475::NZ_CALCKC010000142.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937966475::NZ_CALCKC010000142.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALCKC010000142.1All displayed genes belong to this local TCS context.
Neighborhood span29 726-31 857 nt2 132 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 726 nt31 857 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMD54_RS05070GCF_937966475#QMD54_RS05070
RROmpRCurrent focus
29 726-30 400 nt · Forward (+)
QMD54_RS05075GCF_937966475#QMD54_RS05075
HKClassic
30 397-31 857 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS03770Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1560701
Simplified PFAM architecture for RROC_1560701
PFAM domain coverage: 180 / 224 aa (80.4%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-215]
- Domain count: 2
- Matched identifier: RROC_1560701
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-215
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS03770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_937966475
AssemblyERR1600698_bin.17_CONCOCT_v1.1_MAG · Contighaploid
Genome composition3 314 458 bp · 53,5% GCNeglectibacter timonensis
Signal transduction countsGenes 86 · HK 43 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key