1 Response_reg#1
7-120 aa · 114 aa · 20.5% of protein
Raw token
Response_reg:7:1.74e-27:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMD54_RS04225
Response regulator, PleD_VieA family
Neglectibacter timonensis · GCF_937966475
ClassRRTypePleD_VieALength556 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_937966475#QMD54_RS04225Stable P2CS identifier used across views.
GenomeGCF_937966475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length556 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage431 / 556 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa556 aa
Domain-by-domain annotation3 items
2 GGDEF#2
137-217 aa · 81 aa · 14.6% of protein
Raw token
GGDEF:137:0.00000000318:217:83:1603 EAL#3
304-539 aa · 236 aa · 42.4% of protein
Raw token
EAL:304:2.9e-73:539:236:235- Raw architecture: Response_reg:7:1.74e-27:120:115:111#GGDEF:137:0.00000000318:217:83:160#EAL:304:2.9e-73:539:236:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_937966475::NZ_CALCKC010000122.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6596-8266Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937966475::NZ_CALCKC010000122.1::G00011Context members
QMD54_RS04225
Partner locus tags
QMD54_RS04225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_066865961.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1S2X1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1S2X1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMD54_RS04225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALCKC010000122.1Sequence record reported by the local genomic context database.
Genomic interval6 596-8 266 nt1 671 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 596-8 266 ntGCF_937966475::NZ_CALCKC010000122.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937966475::NZ_CALCKC010000122.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALCKC010000122.1All displayed genes belong to this local TCS context.
Neighborhood span6 596-8 266 nt1 671 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 596 nt8 266 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMD54_RS04225GCF_937966475#QMD54_RS04225
RRPleD_VieACurrent focus
6 596-8 266 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS15020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0066023
Simplified PFAM architecture for RROC_0066023
PFAM domain coverage: 438 / 556 aa (78.8%)
1 aa556 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[7-119] | GGDEF[137-225] | EAL[304-539]
- Domain count: 3
- Matched identifier: RROC_0066023
- Positioned domains: Response_reg 7-119 ; GGDEF 137-225 ; EAL 304-539
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS15020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_937966475
AssemblyERR1600698_bin.17_CONCOCT_v1.1_MAG · Contighaploid
Genome composition3 314 458 bp · 53,5% GCNeglectibacter timonensis
Signal transduction countsGenes 86 · HK 43 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key