1 Response_reg#1
3-111 aa · 109 aa · 41.3% of protein
Raw token
Response_reg:3:4.54e-23:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMD54_RS02270
Response regulator, unclassified
Neglectibacter timonensis · GCF_937966475
ClassRRTypeunclassifiedLength264 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937966475#QMD54_RS02270Stable P2CS identifier used across views.
GenomeGCF_937966475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 264 aa (41.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:4.54e-23:111:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937966475::NZ_CALCKC010000071.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19840-21928Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937966475::NZ_CALCKC010000071.1::G00006Context members
QMD54_RS02270QMD54_RS02275
Partner locus tags
QMD54_RS02270QMD54_RS02275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256191535.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1RVT1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1RVT1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMD54_RS02270Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALCKC010000071.1Sequence record reported by the local genomic context database.
Genomic interval19 840-20 634 nt795 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 840-21 928 ntGCF_937966475::NZ_CALCKC010000071.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937966475::NZ_CALCKC010000071.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALCKC010000071.1All displayed genes belong to this local TCS context.
Neighborhood span19 840-21 928 nt2 089 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 840 nt21 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMD54_RS02270GCF_937966475#QMD54_RS02270
RRunclassifiedCurrent focus
19 840-20 634 nt · Reverse (-)
QMD54_RS02275GCF_937966475#QMD54_RS02275
HKClassic
20 594-21 928 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024460865#NE546_RS13210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0637299
Simplified PFAM architecture for RROC_0637299
PFAM domain coverage: 109 / 264 aa (41.3%)
1 aa264 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-111]
- Domain count: 1
- Matched identifier: RROC_0637299
- Positioned domains: Response_reg 3-111
Cluster members and taxonomy
Representative gene: GCF_024460865#NE546_RS13210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_937966475
AssemblyERR1600698_bin.17_CONCOCT_v1.1_MAG · Contighaploid
Genome composition3 314 458 bp · 53,5% GCNeglectibacter timonensis
Signal transduction countsGenes 86 · HK 43 · RR 41CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key