1 HisKA_3#1
76-139 aa · 64 aa · 23.3% of protein
Raw token
HisKA_3:76:3.3e-19:139:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QV674_RS14880
Histidine kinase, Classic
uncultured Clostridioides sp. · GCF_932185835
ClassHKTypeClassicLength275 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_932185835#QV674_RS14880Stable P2CS identifier used across views.
GenomeGCF_932185835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length275 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 275 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa275 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
182-266 aa · 85 aa · 30.9% of protein
Raw token
HATPase_c:182:0.0000000000011:266:104:109- Raw architecture: HisKA_3:76:3.3e-19:139:65:68#HATPase_c:182:0.0000000000011:266:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_932185835::NZ_CAKNXR010000530.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1618-3083Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_932185835::NZ_CAKNXR010000530.1::G00050Context members
QV674_RS14875QV674_RS14880
Partner locus tags
QV674_RS14875QV674_RS14880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288773442.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQV674_RS14880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAKNXR010000530.1Sequence record reported by the local genomic context database.
Genomic interval2 255-3 083 nt829 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 618-3 083 ntGCF_932185835::NZ_CAKNXR010000530.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_932185835::NZ_CAKNXR010000530.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAKNXR010000530.1All displayed genes belong to this local TCS context.
Neighborhood span1 618-3 083 nt1 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 618 nt3 083 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QV674_RS14875GCF_932185835#QV674_RS14875
RRNarL
1 618-2 262 nt · Reverse (-)
QV674_RS14880GCF_932185835#QV674_RS14880
HKClassicCurrent focus
2 255-3 083 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0206170Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2557601
Simplified PFAM architecture for HKOC_2557601
PFAM domain coverage: 149 / 386 aa (38.6%)
1 aa386 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[187-250] | HATPase_c[293-377]
- Domain count: 2
- Matched identifier: HKOC_2557601
- Positioned domains: HisKA_3 187-250 ; HATPase_c 293-377
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0206170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 403 · GCF_932185835
Assembly0308_J_metabat.001 · Contighaploid
Genome composition3 737 664 bp · 28,5% GCuncultured Clostridioides sp.
Signal transduction countsGenes 90 · HK 42 · RR 46CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key