1 HAMP#1
148-215 aa · 68 aa · 15.4% of protein
Raw token
HAMP:148:0.00000000000124:215:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QV674_RS07510
Histidine kinase, Classic
uncultured Clostridioides sp. · GCF_932185835
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_932185835#QV674_RS07510Stable P2CS identifier used across views.
GenomeGCF_932185835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage213 / 442 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
227-286 aa · 60 aa · 13.6% of protein
Raw token
HisKA:227:0.00000000047:286:61:643 HATPase_c#3
333-417 aa · 85 aa · 19.2% of protein
Raw token
HATPase_c:333:0.00000000000000619:417:88:109- Raw architecture: HAMP:148:0.00000000000124:215:68:69#HisKA:227:0.00000000047:286:61:64#HATPase_c:333:0.00000000000000619:417:88:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_932185835::NZ_CAKNXR010000269.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1330Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_932185835::NZ_CAKNXR010000269.1::G00023Context members
QV674_RS07510
Partner locus tags
QV674_RS07510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288771626.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQV674_RS07510Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAKNXR010000269.1Sequence record reported by the local genomic context database.
Genomic interval1-1 330 nt1 330 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 330 ntGCF_932185835::NZ_CAKNXR010000269.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_932185835::NZ_CAKNXR010000269.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAKNXR010000269.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 330 nt1 330 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 330 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QV674_RS07510GCF_932185835#QV674_RS07510
HKClassicCurrent focus
1-1 330 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202630Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783624
Simplified PFAM architecture for HKOC_1783624
PFAM domain coverage: 145 / 464 aa (31.3%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[250-308] | HATPase_c[355-440]
- Domain count: 2
- Matched identifier: HKOC_1783624
- Positioned domains: HisKA 250-308 ; HATPase_c 355-440
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 403 · GCF_932185835
Assembly0308_J_metabat.001 · Contighaploid
Genome composition3 737 664 bp · 28,5% GCuncultured Clostridioides sp.
Signal transduction countsGenes 90 · HK 42 · RR 46CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key