1 HisKA#1
80-147 aa · 68 aa · 22.0% of protein
Raw token
HisKA:80:0.0000000000000222:147:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QV674_RS06670
Histidine kinase, Classic
uncultured Clostridioides sp. · GCF_932185835
ClassHKTypeClassicLength309 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_932185835#QV674_RS06670Stable P2CS identifier used across views.
GenomeGCF_932185835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 309 aa (52.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
193-286 aa · 94 aa · 30.4% of protein
Raw token
HATPase_c:193:0.000000000000371:286:98:109- Raw architecture: HisKA:80:0.0000000000000222:147:68:64#HATPase_c:193:0.000000000000371:286:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_932185835::NZ_CAKNXR010000238.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1042-1973Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_932185835::NZ_CAKNXR010000238.1::G00020Context members
QV674_RS06670
Partner locus tags
QV674_RS06670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288771543.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQV674_RS06670Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAKNXR010000238.1Sequence record reported by the local genomic context database.
Genomic interval1 042-1 973 nt932 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 042-1 973 ntGCF_932185835::NZ_CAKNXR010000238.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_932185835::NZ_CAKNXR010000238.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAKNXR010000238.1All displayed genes belong to this local TCS context.
Neighborhood span1 042-1 973 nt932 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 042 nt1 973 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QV674_RS06670GCF_932185835#QV674_RS06670
HKClassicCurrent focus
1 042-1 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS11615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801037
Simplified PFAM architecture for HKOC_0801037
PFAM domain coverage: 160 / 686 aa (23.3%)
1 aa686 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[457-524] | HATPase_c[571-662]
- Domain count: 2
- Matched identifier: HKOC_0801037
- Positioned domains: HisKA 457-524 ; HATPase_c 571-662
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS11615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 403 · GCF_932185835
Assembly0308_J_metabat.001 · Contighaploid
Genome composition3 737 664 bp · 28,5% GCuncultured Clostridioides sp.
Signal transduction countsGenes 90 · HK 42 · RR 46CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key