1 Response_reg#1
4-113 aa · 110 aa · 44.2% of protein
Raw token
Response_reg:4:3.05e-28:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QV674_RS00535
Response regulator LytTR family
uncultured Clostridioides sp. · GCF_932185835
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_932185835#QV674_RS00535Stable P2CS identifier used across views.
GenomeGCF_932185835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 249 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
157-249 aa · 93 aa · 37.3% of protein
Raw token
LytTR:157:1.86e-29:249:93:98- Raw architecture: Response_reg:4:3.05e-28:113:112:111#LytTR:157:1.86e-29:249:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_932185835::NZ_CAKNXR010000018.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span401-2356Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_932185835::NZ_CAKNXR010000018.1::G00001Context members
QV674_RS00530QV674_RS00535
Partner locus tags
QV674_RS00530QV674_RS00535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288767576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQV674_RS00535Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAKNXR010000018.1Sequence record reported by the local genomic context database.
Genomic interval1 608-2 356 nt749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span401-2 356 ntGCF_932185835::NZ_CAKNXR010000018.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_932185835::NZ_CAKNXR010000018.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAKNXR010000018.1All displayed genes belong to this local TCS context.
Neighborhood span401-2 356 nt1 956 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
401 nt2 356 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QV674_RS00530GCF_932185835#QV674_RS00530
HKClassic
401-1 603 nt · Forward (+)
QV674_RS00535GCF_932185835#QV674_RS00535
RRLytTRCurrent focus
1 608-2 356 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0673073
Simplified PFAM architecture for RROC_0673073
PFAM domain coverage: 206 / 256 aa (80.5%)
1 aa256 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[157-253]
- Domain count: 2
- Matched identifier: RROC_0673073
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 157-253 ; LytTR 157-253
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 049 403 · GCF_932185835
Assembly0308_J_metabat.001 · Contighaploid
Genome composition3 737 664 bp · 28,5% GCuncultured Clostridioides sp.
Signal transduction countsGenes 90 · HK 42 · RR 46CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key