1 Response_reg#1
1-59 aa · 59 aa · 35.8% of protein
Raw token
Response_reg:1:0.00000000000000127:59:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NGL06_RS05700
Response regulator NarL family
Bifidobacterium breve · GCF_925285005
ClassRRTypeNarLLength165 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_925285005#NGL06_RS05700Stable P2CS identifier used across views.
GenomeGCF_925285005Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length165 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage116 / 165 aa (70.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa165 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
98-154 aa · 57 aa · 34.5% of protein
Raw token
HTH_LUXR:98:0.000000000000519:154:57:58- Raw architecture: Response_reg:1:0.00000000000000127:59:59:111#HTH_LUXR:98:0.000000000000519:154:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_925285005::NZ_CAKMBB010000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219194-221160Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_925285005::NZ_CAKMBB010000003.1::G00009Context members
NGL06_RS05700NGL06_RS05710
Partner locus tags
NGL06_RS05700NGL06_RS05710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_251868605.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNGL06_RS05700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAKMBB010000003.1Sequence record reported by the local genomic context database.
Genomic interval219 194-219 691 nt498 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 194-221 160 ntGCF_925285005::NZ_CAKMBB010000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_925285005::NZ_CAKMBB010000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAKMBB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span219 194-221 160 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 194 nt221 160 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NGL06_RS05700GCF_925285005#NGL06_RS05700
RRNarLCurrent focus
219 194-219 691 nt · Reverse (-)
NGL06_RS05710GCF_925285005#NGL06_RS05710
HKClassic
219 871-221 160 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS04000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354555
Simplified PFAM architecture for RROC_1354555
PFAM domain coverage: 173 / 227 aa (76.2%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-121] | GerE[161-215]
- Domain count: 2
- Matched identifier: RROC_1354555
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; GerE 161-215 ; GerE 161-215
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS04000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_925285005
AssemblyIM703 · Contighaploid
Genome composition2 453 793 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key