1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:8.1e-18:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FQ155_RS09525
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167915
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167915#FQ155_RS09525Stable P2CS identifier used across views.
GenomeGCF_902167915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.0000000000000012:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:5.23e-21:350:112:109- Raw architecture: HAMP:57:8.1e-18:127:71:69#HisKA:131:0.0000000000000012:195:65:64#HATPase_c:240:5.23e-21:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167915::NZ_CABHNT010000046.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span194427-196222Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLJG463_02052RefSeq proteinWP_186277984.1
Context group ID
GCF_902167915::NZ_CABHNT010000046.1::G00016Context members
FQ155_RS09520FQ155_RS09525
Partner locus tags
FQ155_RS09520FQ155_RS09525
Partner old locus tags
BLJG463_02051BLJG463_02052
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186277984.1Primary protein accession used for annex mappings.
UniProt accessionA0A564VXQ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A564VXQ5_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFQ155_RS09525Primary locus identifier stored in the genes table.
Old locus tagBLJG463_02052Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHNT010000046.1Sequence record reported by the local genomic context database.
Genomic interval195 149-196 222 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span194 427-196 222 ntGCF_902167915::NZ_CABHNT010000046.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167915::NZ_CABHNT010000046.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHNT010000046.1All displayed genes belong to this local TCS context.
Neighborhood span194 427-196 222 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
194 427 nt196 222 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FQ155_RS09520GCF_902167915#FQ155_RS09520
RROmpR
194 427-195 149 nt · Forward (+)
FQ155_RS09525GCF_902167915#FQ155_RS09525
HKClassicCurrent focus
195 149-196 222 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657865#RS668_RS09140Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2768704
Simplified PFAM architecture for HKOC_2768704
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2768704
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_033657865#RS668_RS09140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167915
AssemblyBifidobacterium_longum_subsp_infantis_JG_Bg463 · Contighaploid
Genome composition2 753 599 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key