Gene detail

FQ155_RS03480

Histidine kinase, Classic

Bifidobacterium longum subsp. infantis · GCF_902167915

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_902167915#FQ155_RS03480Stable P2CS identifier used across views.

GenomeGCF_902167915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_2821657Run 6 · 6 sequences · id 100% · cov 80%

External referencesWP_144098855.1 · MIST4 FQ155_RS03480RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length345 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage170 / 345 aa (49.3%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa345 aa

Domain-by-domain annotation2 items

1 HisKA#1

123-188 aa · 66 aa · 19.1% of protein

Raw tokenHisKA:123:0.000000003:188:66:64

2 HATPase_c#2

234-337 aa · 104 aa · 30.1% of protein

Raw tokenHATPase_c:234:5.74e-29:337:104:109

Raw architecture: HisKA:123:0.000000003:188:66:64#HATPase_c:234:5.74e-29:337:104:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_902167915::NZ_CABHNT010000021.1::G00008

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span66659-68391Genomic interval covered by the local TCS group.

Identifiers

Old locus tagBLJG463_01030RefSeq proteinWP_144098855.1

Context group IDGCF_902167915::NZ_CABHNT010000021.1::G00008

Context members

FQ155_RS03480FQ155_RS03485

Partner locus tags

FQ155_RS03480FQ155_RS03485

Partner old locus tags

BLJG463_01030BLJG463_01031

Partner protein IDs

WP_144098855.1 WP_060620621.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_144098855.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagFQ155_RS03480Primary locus identifier stored in the genes table.

Old locus tagBLJG463_01030Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CABHNT010000021.1Sequence record reported by the local genomic context database.

Genomic interval66 659-67 696 nt1 038 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span66 659-68 391 ntGCF_902167915::NZ_CABHNT010000021.1::G00008

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_902167915::NZ_CABHNT010000021.1::G00008

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CABHNT010000021.1All displayed genes belong to this local TCS context.

Neighborhood span66 659-68 391 nt1 733 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

66 659 nt68 391 nt

+-FQ155_RS03480 FQ155_RS03485

Neighborhood gene cards

2 genes in the current local neighborhood.

FQ155_RS03480GCF_902167915#FQ155_RS03480

HKClassicCurrent focus

66 659-67 696 nt · Reverse (-)

Old locus BLJG463_01030RefSeq WP_144098855.1

Open current gene

FQ155_RS03485GCF_902167915#FQ155_RS03485

RROmpR

67 705-68 391 nt · Reverse (-)

Old locus BLJG463_01031RefSeq WP_060620621.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2821657HK

Run 66 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_033657865#RS668_RS03340

Selected clusterHKOC_2821657Run 6 · HK · 6 sequences

Representative sequenceGCF_033657865#RS668_RS03340Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_2821657

Simplified PFAM architecture for HKOC_2821657

PFAM domain coverage: 170 / 345 aa (49.3%)

1 aa345 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[125-188] | HATPase_c[234-339]
Domain count: 2
Matched identifier: HKOC_2821657
Positioned domains: HisKA 125-188 ; HATPase_c 234-339

Cluster members and taxonomy

Representative gene: GCF_033657865#RS668_RS03340

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167915

AssemblyBifidobacterium_longum_subsp_infantis_JG_Bg463 · Contighaploid

Genome composition2 753 599 bp · 60,0% GCBifidobacterium longum subsp. infantis

Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

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