1 HisKA_3#1
219-283 aa · 65 aa · 14.7% of protein
Raw token
HisKA_3:219:0.0000000000643:283:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FP559_RS08300
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167615
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167615#FP559_RS08300Stable P2CS identifier used across views.
GenomeGCF_902167615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 441 aa (33.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
349-429 aa · 81 aa · 18.4% of protein
Raw token
HATPase_c:349:0.0000756:429:91:109- Raw architecture: HisKA_3:219:0.0000000000643:283:65:68#HATPase_c:349:0.0000756:429:91:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167615::NZ_CABHMR010000005.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span190733-192782Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILO354833AE_01588RefSeq proteinWP_143723677.1
Context group ID
GCF_902167615::NZ_CABHMR010000005.1::G00014Context members
FP559_RS08295FP559_RS08300
Partner locus tags
FP559_RS08295FP559_RS08300
Partner old locus tags
BILO354833AE_01587BILO354833AE_01588
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_143723677.1Primary protein accession used for annex mappings.
UniProt accessionA0A564RY63Primary UniProt accession resolved in the annex database.
UniProt IDA0A564RY63_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFP559_RS08300Primary locus identifier stored in the genes table.
Old locus tagBILO354833AE_01588Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMR010000005.1Sequence record reported by the local genomic context database.
Genomic interval191 457-192 782 nt1 326 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 733-192 782 ntGCF_902167615::NZ_CABHMR010000005.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167615::NZ_CABHMR010000005.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMR010000005.1All displayed genes belong to this local TCS context.
Neighborhood span190 733-192 782 nt2 050 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 733 nt192 782 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FP559_RS08295GCF_902167615#FP559_RS08295
RRNarL
190 733-191 440 nt · Reverse (-)
FP559_RS08300GCF_902167615#FP559_RS08300
HKClassicCurrent focus
191 457-192 782 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS08065Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2067709
Simplified PFAM architecture for HKOC_2067709
PFAM domain coverage: 68 / 441 aa (15.4%)
1 aa441 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[219-286]
- Domain count: 1
- Matched identifier: HKOC_2067709
- Positioned domains: HisKA_3 219-286
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS08065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167615
AssemblyB.longum_ssp_infantis_3_mod_mod2 · Contighaploid
Genome composition2 405 437 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key