1 HisKA#1
261-325 aa · 65 aa · 13.1% of protein
Raw token
HisKA:261:0.00000000000118:325:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FP559_RS06300
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167615
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167615#FP559_RS06300Stable P2CS identifier used across views.
GenomeGCF_902167615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 498 aa (35.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
388-498 aa · 111 aa · 22.3% of protein
Raw token
HATPase_c:388:0.0000000000000392:498:111:109- Raw architecture: HisKA:261:0.00000000000118:325:65:64#HATPase_c:388:0.0000000000000392:498:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167615::NZ_CABHMR010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1356079-1358279Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILO354833AE_01202RefSeq proteinWP_236822730.1
Context group ID
GCF_902167615::NZ_CABHMR010000001.1::G00009Context members
FP559_RS06295FP559_RS06300
Partner locus tags
FP559_RS06295FP559_RS06300
Partner old locus tags
BILO354833AE_01201BILO354833AE_01202
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236822730.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFP559_RS06300Primary locus identifier stored in the genes table.
Old locus tagBILO354833AE_01202Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMR010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 356 783-1 358 279 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 356 079-1 358 279 ntGCF_902167615::NZ_CABHMR010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167615::NZ_CABHMR010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 356 079-1 358 279 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 356 079 nt1 358 279 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FP559_RS06295GCF_902167615#FP559_RS06295
RROmpR
1 356 079-1 356 786 nt · Forward (+)
FP559_RS06300GCF_902167615#FP559_RS06300
HKClassicCurrent focus
1 356 783-1 358 279 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS06110Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1490791
Simplified PFAM architecture for HKOC_1490791
PFAM domain coverage: 167 / 498 aa (33.5%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[261-325] | HATPase_c[389-490]
- Domain count: 2
- Matched identifier: HKOC_1490791
- Positioned domains: HisKA 261-325 ; HATPase_c 389-490
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS06110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167615
AssemblyB.longum_ssp_infantis_3_mod_mod2 · Contighaploid
Genome composition2 405 437 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key