1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:2.77e-27:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FP566_RS08035
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_902167555
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167555#FP566_RS08035Stable P2CS identifier used across views.
GenomeGCF_902167555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa296 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:8.63e-25:290:58:58- Raw architecture: Response_reg:9:2.77e-27:146:138:111#HTH_LUXR:233:8.63e-25:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167555::NZ_CABHMO010000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1733225-1736595Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILO145876EF_01531RefSeq proteinWP_032738954.1
Context group ID
GCF_902167555::NZ_CABHMO010000001.1::G00016Context members
FP566_RS08030FP566_RS08035
Partner locus tags
FP566_RS08030FP566_RS08035
Partner old locus tags
BILO145876EF_01530BILO145876EF_01531
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032738954.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2VZS9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2VZS9_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFP566_RS08035Primary locus identifier stored in the genes table.
Old locus tagBILO145876EF_01531Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMO010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 735 705-1 736 595 nt891 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 733 225-1 736 595 ntGCF_902167555::NZ_CABHMO010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167555::NZ_CABHMO010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 733 225-1 736 595 nt3 371 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 733 225 nt1 736 595 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FP566_RS08030GCF_902167555#FP566_RS08030
HKClassic
1 733 225-1 735 621 nt · Forward (+)
FP566_RS08035GCF_902167555#FP566_RS08035
RRNarLCurrent focus
1 735 705-1 736 595 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000196575#BLIF_RS03690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580190
Simplified PFAM architecture for RROC_0580190
PFAM domain coverage: 193 / 296 aa (65.2%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-145] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580190
- Positioned domains: Response_reg 9-145 ; Response_reg 9-145 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_000196575#BLIF_RS03690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167555
AssemblyB.longum_ssp_infantis_2_mod_mod2 · Contighaploid
Genome composition2 622 864 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 14 · RR 21CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key