1 HisKA#1
259-325 aa · 67 aa · 13.5% of protein
Raw token
HisKA:259:0.000000000000894:325:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FP566_RS06405
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167555
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167555#FP566_RS06405Stable P2CS identifier used across views.
GenomeGCF_902167555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 498 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
388-498 aa · 111 aa · 22.3% of protein
Raw token
HATPase_c:388:0.0000000000000384:498:111:109- Raw architecture: HisKA:259:0.000000000000894:325:67:64#HATPase_c:388:0.0000000000000384:498:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167555::NZ_CABHMO010000001.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1407272-1409439Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILO145876EF_01219RefSeq proteinWP_065472541.1
Context group ID
GCF_902167555::NZ_CABHMO010000001.1::G00013Context members
FP566_RS06405FP566_RS06410
Partner locus tags
FP566_RS06405FP566_RS06410
Partner old locus tags
BILO145876EF_01219BILO145876EF_01220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065472541.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2VZR5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2VZR5_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFP566_RS06405Primary locus identifier stored in the genes table.
Old locus tagBILO145876EF_01219Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMO010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 407 272-1 408 768 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 407 272-1 409 439 ntGCF_902167555::NZ_CABHMO010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167555::NZ_CABHMO010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 407 272-1 409 439 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 407 272 nt1 409 439 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FP566_RS06405GCF_902167555#FP566_RS06405
HKClassicCurrent focus
1 407 272-1 408 768 nt · Reverse (-)
FP566_RS06410GCF_902167555#FP566_RS06410
RROmpR
1 408 765-1 409 439 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686125#BAD16_RS02100Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487799
Simplified PFAM architecture for HKOC_1487799
PFAM domain coverage: 168 / 498 aa (33.7%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[260-325] | HATPase_c[389-490]
- Domain count: 2
- Matched identifier: HKOC_1487799
- Positioned domains: HisKA 260-325 ; HATPase_c 389-490
Cluster members and taxonomy
Representative gene: GCF_001686125#BAD16_RS02100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167555
AssemblyB.longum_ssp_infantis_2_mod_mod2 · Contighaploid
Genome composition2 622 864 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 14 · RR 21CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key