1 HAMP#1
152-223 aa · 72 aa · 15.9% of protein
Raw token
HAMP:152:0.0000866:223:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FP566_RS06030
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167555
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167555#FP566_RS06030Stable P2CS identifier used across views.
GenomeGCF_902167555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 454 aa (54.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.5% of protein
Raw token
HisKA:234:0.00000000000000191:299:66:643 HATPase_c#3
344-453 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:344:1.88e-20:453:110:109- Raw architecture: HAMP:152:0.0000866:223:72:69#HisKA:234:0.00000000000000191:299:66:64#HATPase_c:344:1.88e-20:453:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167555::NZ_CABHMO010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1336258-1338272Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILO145876EF_01145RefSeq proteinWP_143724611.1
Context group ID
GCF_902167555::NZ_CABHMO010000001.1::G00011Context members
FP566_RS06025FP566_RS06030
Partner locus tags
FP566_RS06025FP566_RS06030
Partner old locus tags
BILO145876EF_01144BILO145876EF_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143724611.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFP566_RS06030Primary locus identifier stored in the genes table.
Old locus tagBILO145876EF_01145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMO010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 336 908-1 338 272 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 336 258-1 338 272 ntGCF_902167555::NZ_CABHMO010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167555::NZ_CABHMO010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 336 258-1 338 272 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 336 258 nt1 338 272 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FP566_RS06025GCF_902167555#FP566_RS06025
RROmpR
1 336 258-1 336 923 nt · Forward (+)
FP566_RS06030GCF_902167555#FP566_RS06030
HKClassicCurrent focus
1 336 908-1 338 272 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902167555#FP566_RS06030The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1924484
Simplified PFAM architecture for HKOC_1924484
PFAM domain coverage: 174 / 454 aa (38.3%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-297] | HATPase_c[344-453]
- Domain count: 2
- Matched identifier: HKOC_1924484
- Positioned domains: HisKA 234-297 ; HATPase_c 344-453
Cluster members and taxonomy
Representative gene: GCF_902167555#FP566_RS06030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167555
AssemblyB.longum_ssp_infantis_2_mod_mod2 · Contighaploid
Genome composition2 622 864 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 14 · RR 21CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key