1 HisKA_3#1
265-329 aa · 65 aa · 13.4% of protein
Raw token
HisKA_3:265:0.00000000000877:329:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FP566_RS03225
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167555
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167555#FP566_RS03225Stable P2CS identifier used across views.
GenomeGCF_902167555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 485 aa (31.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
395-480 aa · 86 aa · 17.7% of protein
Raw token
HATPase_c:395:0.0000438:480:96:109- Raw architecture: HisKA_3:265:0.00000000000877:329:65:68#HATPase_c:395:0.0000438:480:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167555::NZ_CABHMO010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span688664-690863Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILO145876EF_00604RefSeq proteinWP_234883528.1
Context group ID
GCF_902167555::NZ_CABHMO010000001.1::G00008Context members
FP566_RS03220FP566_RS03225
Partner locus tags
FP566_RS03220FP566_RS03225
Partner old locus tags
BILO145876EF_00603BILO145876EF_00604
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234883528.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFP566_RS03225Primary locus identifier stored in the genes table.
Old locus tagBILO145876EF_00604Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHMO010000001.1Sequence record reported by the local genomic context database.
Genomic interval689 406-690 863 nt1 458 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span688 664-690 863 ntGCF_902167555::NZ_CABHMO010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167555::NZ_CABHMO010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHMO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span688 664-690 863 nt2 200 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
688 664 nt690 863 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FP566_RS03220GCF_902167555#FP566_RS03220
RRNarL
688 664-689 392 nt · Reverse (-)
FP566_RS03225GCF_902167555#FP566_RS03225
HKClassicCurrent focus
689 406-690 863 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033659025#RS702_RS03075Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1581190
Simplified PFAM architecture for HKOC_1581190
PFAM domain coverage: 68 / 485 aa (14.0%)
1 aa485 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[265-332]
- Domain count: 1
- Matched identifier: HKOC_1581190
- Positioned domains: HisKA_3 265-332
Cluster members and taxonomy
Representative gene: GCF_033659025#RS702_RS03075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167555
AssemblyB.longum_ssp_infantis_2_mod_mod2 · Contighaploid
Genome composition2 622 864 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 14 · RR 21CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key