1 HisKA_3#1
247-305 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:247:0.00000000000000666:305:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPLFYP29_RS01410
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_902167545
ClassHKTypeClassicLength800 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167545#BPLFYP29_RS01410Stable P2CS identifier used across views.
GenomeGCF_902167545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length800 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 800 aa (28.0%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
348-441 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:348:0.000000000000101:441:110:1093 HisKA_3#3
697-767 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:697:0.0000354:767:71:68- Raw architecture: HisKA_3:247:0.00000000000000666:305:59:68#HATPase_c:348:0.000000000000101:441:110:109#HisKA_3:697:0.0000354:767:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167545::NZ_CABHOC010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span325169-328545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBILOF6F16E45_00283%2CFQ316_RS01445RefSeq proteinWP_251847585.1
Context group ID
GCF_902167545::NZ_CABHOC010000001.1::G00004Context members
BPLFYP29_RS01405BPLFYP29_RS01410
Partner locus tags
BPLFYP29_RS01405BPLFYP29_RS01410
Partner old locus tags
BILOF6F16E45_00282%2CFQ316_RS01440BILOF6F16E45_00283%2CFQ316_RS01445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_251847585.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35S901Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35S901_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPLFYP29_RS01410Primary locus identifier stored in the genes table.
Old locus tagBILOF6F16E45_00283%2CFQ316_RS01445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval326 143-328 545 nt2 403 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span325 169-328 545 ntGCF_902167545::NZ_CABHOC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167545::NZ_CABHOC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span325 169-328 545 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
325 169 nt328 545 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPLFYP29_RS01405GCF_902167545#BPLFYP29_RS01405
RRNarL
325 169-326 059 nt · Reverse (-)
BPLFYP29_RS01410GCF_902167545#BPLFYP29_RS01410
HKClassicCurrent focus
326 143-328 545 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344545#RS890_RS01455Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0557262
Simplified PFAM architecture for HKOC_0557262
PFAM domain coverage: 417 / 800 aa (52.1%)
1 aa800 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-145] | HisKA_3[247-308] | HATPase_c[348-440] | DUF7134[488-619]
- Domain count: 4
- Matched identifier: HKOC_0557262
- Positioned domains: DUF7134 16-145 ; HisKA_3 247-308 ; HATPase_c 348-440 ; DUF7134 488-619
Cluster members and taxonomy
Representative gene: GCF_033344545#RS890_RS01455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_902167545
AssemblyB.longum_ssp_longum_mod2 · Contighaploid
Genome composition2 402 824 bp · 59,5% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key