1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000103:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JX293_RS01025
Histidine kinase, Classic
Bifidobacterium longum · GCF_901873505
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901873505#JX293_RS01025Stable P2CS identifier used across views.
GenomeGCF_901873505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.00000000043:414:98:109- Raw architecture: HisKA_3:210:0.00000000000103:271:65:68#HATPase_c:330:0.00000000043:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901873505::NZ_CABFLL010000005.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26078-28043Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOILLDJDD_02072RefSeq proteinWP_071474727.1
Context group ID
GCF_901873505::NZ_CABFLL010000005.1::G00002Context members
JX293_RS01020JX293_RS01025
Partner locus tags
JX293_RS01020JX293_RS01025
Partner old locus tags
OILLDJDD_02071OILLDJDD_02072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071474727.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2W099Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2W099_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJX293_RS01025Primary locus identifier stored in the genes table.
Old locus tagOILLDJDD_02072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABFLL010000005.1Sequence record reported by the local genomic context database.
Genomic interval26 754-28 043 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 078-28 043 ntGCF_901873505::NZ_CABFLL010000005.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901873505::NZ_CABFLL010000005.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABFLL010000005.1All displayed genes belong to this local TCS context.
Neighborhood span26 078-28 043 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 078 nt28 043 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JX293_RS01020GCF_901873505#JX293_RS01020
RRNarL
26 078-26 761 nt · Reverse (-)
JX293_RS01025GCF_901873505#JX293_RS01025
HKClassicCurrent focus
26 754-28 043 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870705#BFS26_RS04750Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2181383
Simplified PFAM architecture for HKOC_2181383
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2181383
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_001870705#BFS26_RS04750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_901873505
AssemblyBifidobacterium_longum_BgEED06 · Contighaploid
Genome composition2 426 212 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key