1 Response_reg#1
4-111 aa · 108 aa · 48.9% of protein
Raw token
Response_reg:4:8.75e-31:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGAMC1_RS05190
Response regulator OmpR family
Bifidobacterium longum · GCF_901212585
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901212585#EGAMC1_RS05190Stable P2CS identifier used across views.
GenomeGCF_901212585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 221 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 33.9% of protein
Raw token
Trans_reg_C:144:1.83e-23:218:77:77- Raw architecture: Response_reg:4:8.75e-31:111:111:111#Trans_reg_C:144:1.83e-23:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901212585::NZ_CAAKOD010000069.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21206-23220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLOMC2_01192%2CFGK90_RS05425RefSeq proteinWP_143723995.1
Context group ID
GCF_901212585::NZ_CAAKOD010000069.1::G00006Context members
EGAMC1_RS05185EGAMC1_RS05190
Partner locus tags
EGAMC1_RS05185EGAMC1_RS05190
Partner old locus tags
BLOMC2_01191%2CFGK90_RS05420BLOMC2_01192%2CFGK90_RS05425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143723995.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGAMC1_RS05190Primary locus identifier stored in the genes table.
Old locus tagBLOMC2_01192%2CFGK90_RS05425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAKOD010000069.1Sequence record reported by the local genomic context database.
Genomic interval22 555-23 220 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 206-23 220 ntGCF_901212585::NZ_CAAKOD010000069.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901212585::NZ_CAAKOD010000069.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAKOD010000069.1All displayed genes belong to this local TCS context.
Neighborhood span21 206-23 220 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 206 nt23 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGAMC1_RS05185GCF_901212585#EGAMC1_RS05185
HKClassic
21 206-22 495 nt · Reverse (-)
EGAMC1_RS05190GCF_901212585#EGAMC1_RS05190
RROmpRCurrent focus
22 555-23 220 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037967165#AAC714_RS10405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0899654
Simplified PFAM architecture for RROC_0899654
PFAM domain coverage: 181 / 240 aa (75.4%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-130] | Trans_reg_C[164-236]
- Domain count: 2
- Matched identifier: RROC_0899654
- Positioned domains: Response_reg 23-130 ; Trans_reg_C 164-236
Cluster members and taxonomy
Representative gene: GCF_037967165#AAC714_RS10405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_901212585
AssemblyNZ_Bifidobacterium_longum_subsp_infantis_MC2 · Scaffoldhaploid
Genome composition2 558 326 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key