1 HisKA#1
209-274 aa · 66 aa · 15.4% of protein
Raw token
HisKA:209:0.00000000000000182:274:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EGAMC1_RS05185
Histidine kinase, Classic
Bifidobacterium longum · GCF_901212585
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901212585#EGAMC1_RS05185Stable P2CS identifier used across views.
GenomeGCF_901212585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 429 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
319-428 aa · 110 aa · 25.6% of protein
Raw token
HATPase_c:319:4.19e-21:428:110:109- Raw architecture: HisKA:209:0.00000000000000182:274:66:64#HATPase_c:319:4.19e-21:428:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901212585::NZ_CAAKOD010000069.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21206-23220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLOMC2_01191%2CFGK90_RS05420RefSeq proteinWP_234883674.1
Context group ID
GCF_901212585::NZ_CAAKOD010000069.1::G00006Context members
EGAMC1_RS05185EGAMC1_RS05190
Partner locus tags
EGAMC1_RS05185EGAMC1_RS05190
Partner old locus tags
BLOMC2_01191%2CFGK90_RS05420BLOMC2_01192%2CFGK90_RS05425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234883674.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEGAMC1_RS05185Primary locus identifier stored in the genes table.
Old locus tagBLOMC2_01191%2CFGK90_RS05420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAKOD010000069.1Sequence record reported by the local genomic context database.
Genomic interval21 206-22 495 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 206-23 220 ntGCF_901212585::NZ_CAAKOD010000069.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901212585::NZ_CAAKOD010000069.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAKOD010000069.1All displayed genes belong to this local TCS context.
Neighborhood span21 206-23 220 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 206 nt23 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EGAMC1_RS05185GCF_901212585#EGAMC1_RS05185
HKClassicCurrent focus
21 206-22 495 nt · Reverse (-)
EGAMC1_RS05190GCF_901212585#EGAMC1_RS05190
RROmpR
22 555-23 220 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033658105#RS699_RS04765Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2185273
Simplified PFAM architecture for HKOC_2185273
PFAM domain coverage: 174 / 429 aa (40.6%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2185273
- Positioned domains: HisKA 209-272 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_033658105#RS699_RS04765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_901212585
AssemblyNZ_Bifidobacterium_longum_subsp_infantis_MC2 · Scaffoldhaploid
Genome composition2 558 326 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key