1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:1.12e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF54_RS06355
Response regulator OmpR family
Clostridioides difficile · GCF_901004755
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004755#FJF54_RS06355Stable P2CS identifier used across views.
GenomeGCF_901004755Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:1.18e-22:214:78:77- Raw architecture: Response_reg:3:1.12e-28:111:111:111#Trans_reg_C:142:1.18e-22:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004755::NZ_CAAJVX010000004.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span207845-209814Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402400_01270RefSeq proteinWP_002285815.1
Context group ID
GCF_901004755::NZ_CAAJVX010000004.1::G00025Context members
FJF54_RS06350FJF54_RS06355
Partner locus tags
FJF54_RS06350FJF54_RS06355
Partner old locus tags
SAMEA1402400_01269SAMEA1402400_01270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002285815.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y3Y4Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y3Y4_ENTFDDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF54_RS06355Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402400_01270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVX010000004.1Sequence record reported by the local genomic context database.
Genomic interval209 161-209 814 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span207 845-209 814 ntGCF_901004755::NZ_CAAJVX010000004.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004755::NZ_CAAJVX010000004.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVX010000004.1All displayed genes belong to this local TCS context.
Neighborhood span207 845-209 814 nt1 970 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
207 845 nt209 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF54_RS06350GCF_901004755#FJF54_RS06350
HKClassic
207 845-209 164 nt · Reverse (-)
FJF54_RS06355GCF_901004755#FJF54_RS06355
RROmpRCurrent focus
209 161-209 814 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS08945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847442
Simplified PFAM architecture for RROC_1847442
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1847442
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS08945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004755
Assembly7614_7#11 · Contighaploid
Genome composition4 066 772 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 50 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key