1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000264:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF66_RS04965
Histidine kinase, Classic
Clostridioides difficile · GCF_901004615
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004615#FJF66_RS04965Stable P2CS identifier used across views.
GenomeGCF_901004615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 343 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-343 aa · 103 aa · 30.0% of protein
Raw token
HATPase_c:241:3.73e-27:343:103:109- Raw architecture: HisKA:123:0.000000264:189:67:64#HATPase_c:241:3.73e-27:343:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004615::NZ_CAAJVI010000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span417172-418889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402369_01001RefSeq proteinWP_009260048.1
Context group ID
GCF_901004615::NZ_CAAJVI010000002.1::G00015Context members
FJF66_RS04960FJF66_RS04965
Partner locus tags
FJF66_RS04960FJF66_RS04965
Partner old locus tags
SAMEA1402369_01000SAMEA1402369_01001
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009260048.1Primary protein accession used for annex mappings.
UniProt accessionA0A414I4R4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414I4R4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF66_RS04965Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402369_01001Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVI010000002.1Sequence record reported by the local genomic context database.
Genomic interval417 858-418 889 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span417 172-418 889 ntGCF_901004615::NZ_CAAJVI010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004615::NZ_CAAJVI010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span417 172-418 889 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
417 172 nt418 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF66_RS04960GCF_901004615#FJF66_RS04960
RROmpR
417 172-417 861 nt · Forward (+)
FJF66_RS04965GCF_901004615#FJF66_RS04965
HKClassicCurrent focus
417 858-418 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000420885#G593_RS0115535Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827942
Simplified PFAM architecture for HKOC_2827942
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2827942
- Positioned domains: HisKA 125-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_000420885#G593_RS0115535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004615
Assembly7614_4#73 · Contighaploid
Genome composition4 274 293 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 55 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key