1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:1.39e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF66_RS04960
Response regulator OmpR family
Clostridioides difficile · GCF_901004615
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004615#FJF66_RS04960Stable P2CS identifier used across views.
GenomeGCF_901004615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1.44e-27:223:78:77- Raw architecture: Response_reg:4:1.39e-34:114:111:111#Trans_reg_C:148:1.44e-27:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004615::NZ_CAAJVI010000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span417172-418889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402369_01000RefSeq proteinWP_019162604.1
Context group ID
GCF_901004615::NZ_CAAJVI010000002.1::G00015Context members
FJF66_RS04960FJF66_RS04965
Partner locus tags
FJF66_RS04960FJF66_RS04965
Partner old locus tags
SAMEA1402369_01000SAMEA1402369_01001
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_019162604.1Primary protein accession used for annex mappings.
UniProt accessionA0A174RPC0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174RPC0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF66_RS04960Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402369_01000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVI010000002.1Sequence record reported by the local genomic context database.
Genomic interval417 172-417 861 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span417 172-418 889 ntGCF_901004615::NZ_CAAJVI010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004615::NZ_CAAJVI010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span417 172-418 889 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
417 172 nt418 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF66_RS04960GCF_901004615#FJF66_RS04960
RROmpRCurrent focus
417 172-417 861 nt · Forward (+)
FJF66_RS04965GCF_901004615#FJF66_RS04965
HKClassic
417 858-418 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000420885#G593_RS0115530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1249418
Simplified PFAM architecture for RROC_1249418
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1249418
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000420885#G593_RS0115530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004615
Assembly7614_4#73 · Contighaploid
Genome composition4 274 293 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 55 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key