1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:1.26e-27:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF30_RS08140
Response regulator OmpR family
Clostridioides difficile · GCF_901004525
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004525#FJF30_RS08140Stable P2CS identifier used across views.
GenomeGCF_901004525Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-230 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:160:1.68e-26:230:74:77- Raw architecture: Response_reg:5:1.26e-27:114:111:111#Trans_reg_C:160:1.68e-26:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004525::NZ_CAAJVB010000007.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span121367-123560Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402359_01635RefSeq proteinWP_107578519.1
Context group ID
GCF_901004525::NZ_CAAJVB010000007.1::G00021Context members
FJF30_RS08140FJF30_RS08145
Partner locus tags
FJF30_RS08140FJF30_RS08145
Partner old locus tags
SAMEA1402359_01635SAMEA1402359_01636
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107578519.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF30_RS08140Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402359_01635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVB010000007.1Sequence record reported by the local genomic context database.
Genomic interval121 367-122 071 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span121 367-123 560 ntGCF_901004525::NZ_CAAJVB010000007.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004525::NZ_CAAJVB010000007.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span121 367-123 560 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 367 nt123 560 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF30_RS08140GCF_901004525#FJF30_RS08140
RROmpRCurrent focus
121 367-122 071 nt · Forward (+)
FJF30_RS08145GCF_901004525#FJF30_RS08145
HKClassic
122 073-123 560 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024259965#NMF99_RS03610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1065345
Simplified PFAM architecture for RROC_1065345
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[159-230]
- Domain count: 2
- Matched identifier: RROC_1065345
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 159-230
Cluster members and taxonomy
Representative gene: GCF_024259965#NMF99_RS03610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004525
Assembly7614_4#58 · Contighaploid
Genome composition4 288 095 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key