1 Response_reg#1
5-112 aa · 108 aa · 48.0% of protein
Raw token
Response_reg:5:2.69e-25:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF30_RS00590
Response regulator OmpR family
Clostridioides difficile · GCF_901004525
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_901004525#FJF30_RS00590Stable P2CS identifier used across views.
GenomeGCF_901004525Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:147:1e-29:223:77:77- Raw architecture: Response_reg:5:2.69e-25:112:109:111#Trans_reg_C:147:1e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_901004525::NZ_CAAJVB010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span134006-134683Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402359_00119RefSeq proteinWP_021426833.1
Context group ID
GCF_901004525::NZ_CAAJVB010000001.1::G00004Context members
FJF30_RS00590
Partner locus tags
FJF30_RS00590
Partner old locus tags
SAMEA1402359_00119
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021426833.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF30_RS00590Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402359_00119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVB010000001.1Sequence record reported by the local genomic context database.
Genomic interval134 006-134 683 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 006-134 683 ntGCF_901004525::NZ_CAAJVB010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004525::NZ_CAAJVB010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span134 006-134 683 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 006 nt134 683 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FJF30_RS00590GCF_901004525#FJF30_RS00590
RROmpRCurrent focus
134 006-134 683 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000452005#QUI_RS02315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466535
Simplified PFAM architecture for RROC_1466535
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-223]
- Domain count: 2
- Matched identifier: RROC_1466535
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-223 ; Trans_reg_C 147-223
Cluster members and taxonomy
Representative gene: GCF_000452005#QUI_RS02315
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 9 over 9 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004525
Assembly7614_4#58 · Contighaploid
Genome composition4 288 095 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key