1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.55e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF24_RS13135
Response regulator OmpR family
Clostridioides difficile · GCF_901004515
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_901004515#FJF24_RS13135Stable P2CS identifier used across views.
GenomeGCF_901004515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.44e-22:223:75:77- Raw architecture: Response_reg:5:1.55e-23:114:111:111#Trans_reg_C:150:2.44e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_901004515::NZ_CAAJVC010000014.1::G00030
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span19804-23298Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402336_02634RefSeq proteinWP_070116814.1
Context group ID
GCF_901004515::NZ_CAAJVC010000014.1::G00030Context members
FJF24_RS13135FJF24_RS13140FJF24_RS13145
Partner locus tags
FJF24_RS13135FJF24_RS13140FJF24_RS13145
Partner old locus tags
SAMEA1402336_02634SAMEA1402336_02635SAMEA1402336_02636
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070116814.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF24_RS13135Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402336_02634Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVC010000014.1Sequence record reported by the local genomic context database.
Genomic interval19 804-20 484 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 804-23 298 ntGCF_901004515::NZ_CAAJVC010000014.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004515::NZ_CAAJVC010000014.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVC010000014.1All displayed genes belong to this local TCS context.
Neighborhood span19 804-23 298 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 804 nt23 298 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
FJF24_RS13135GCF_901004515#FJF24_RS13135
RROmpRCurrent focus
19 804-20 484 nt · Reverse (-)
FJF24_RS13140GCF_901004515#FJF24_RS13140
HKClassic
20 534-22 549 nt · Reverse (-)
FJF24_RS13145GCF_901004515#FJF24_RS13145
RROmpR
22 621-23 298 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757585#BW25_RS04655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1416456
Simplified PFAM architecture for RROC_1416456
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1416456
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_001757585#BW25_RS04655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004515
Assembly7614_4#56 · Scaffoldhaploid
Genome composition4 161 331 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key