1 Response_reg#1
5-117 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:5:8.65e-24:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF26_RS08725
Response regulator, unclassified
Clostridioides difficile · GCF_901004505
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004505#FJF26_RS08725Stable P2CS identifier used across views.
GenomeGCF_901004505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 232 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
186-226 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:186:0.0000385:226:41:42- Raw architecture: Response_reg:5:8.65e-24:117:113:111#HTH_AraC:186:0.0000385:226:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004505::NZ_CAAJUZ010000008.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148088-150405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402368_01760RefSeq proteinWP_065986538.1
Context group ID
GCF_901004505::NZ_CAAJUZ010000008.1::G00027Context members
FJF26_RS08720FJF26_RS08725
Partner locus tags
FJF26_RS08720FJF26_RS08725
Partner old locus tags
SAMEA1402368_01759SAMEA1402368_01760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065986538.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF26_RS08725Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402368_01760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJUZ010000008.1Sequence record reported by the local genomic context database.
Genomic interval149 707-150 405 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span148 088-150 405 ntGCF_901004505::NZ_CAAJUZ010000008.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004505::NZ_CAAJUZ010000008.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJUZ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span148 088-150 405 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 088 nt150 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF26_RS08720GCF_901004505#FJF26_RS08720
HKClassic
148 088-149 593 nt · Forward (+)
FJF26_RS08725GCF_901004505#FJF26_RS08725
RRunclassifiedCurrent focus
149 707-150 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS16155Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129390
Simplified PFAM architecture for RROC_1129390
PFAM domain coverage: 189 / 232 aa (81.5%)
1 aa232 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1129390
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 151-227 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS16155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004505
Assembly7614_4#54 · Contighaploid
Genome composition4 222 331 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key