1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:2.28e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FJF28_RS17140
Response regulator OmpR family
Clostridioides difficile · GCF_901004495
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_901004495#FJF28_RS17140Stable P2CS identifier used across views.
GenomeGCF_901004495Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:1.08e-26:221:75:77- Raw architecture: Response_reg:4:2.28e-25:113:111:111#Trans_reg_C:148:1.08e-26:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_901004495::NZ_CAAJVA010000015.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70433-72135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402382_03452RefSeq proteinWP_032544264.1
Context group ID
GCF_901004495::NZ_CAAJVA010000015.1::G00055Context members
FJF28_RS17140FJF28_RS17145
Partner locus tags
FJF28_RS17140FJF28_RS17145
Partner old locus tags
SAMEA1402382_03452SAMEA1402382_03453
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032544264.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFJF28_RS17140Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402382_03452Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAAJVA010000015.1Sequence record reported by the local genomic context database.
Genomic interval70 433-71 107 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 433-72 135 ntGCF_901004495::NZ_CAAJVA010000015.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_901004495::NZ_CAAJVA010000015.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAAJVA010000015.1All displayed genes belong to this local TCS context.
Neighborhood span70 433-72 135 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 433 nt72 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FJF28_RS17140GCF_901004495#FJF28_RS17140
RROmpRCurrent focus
70 433-71 107 nt · Forward (+)
FJF28_RS17145GCF_901004495#FJF28_RS17145
HKClassic
71 131-72 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450445#QKY_RS07220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1531949
Simplified PFAM architecture for RROC_1531949
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1531949
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000450445#QKY_RS07220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_901004495
Assembly7614_4#53 · Contighaploid
Genome composition4 336 767 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key